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In order to infer evolutionary relationships between proteins, a certain level of sequence conservation is required.
The persistence length is the length of a genome region over which a certain level of sequence identity is consistently maintained.
We produced the expected CB map of the same region from the homologous/allelic chromosome/haplotype by randomly modifying a certain percentage of bands corresponding to a certain level of sequence divergence.
However, a certain level of sequence divergence between the two species could increase the random noise in the hybridization data and possibly result in a lower correlation between V. riparia replicates compared to V. vinifera replicates.
For example, it might be possible to define a certain level of sequence identity that would be a good predictor for a particular class of GO terms; or, certain experimental setup that would provide more trustworthy protein-protein interaction data.
The strong conservation of coiled-coil regions is surprising: A certain level of sequence conservation is expected due to the coiled-coil constraint to preserve the heptad pattern, but this result suggests that a specific amino acid sequence is preserved beyond the pattern per se.
Similar(54)
Therefore, if a certain level of similarity between scheduled sequence and paint entrance sequence is achieved, i.e., above 50% PER, rule-based heuristic model can be used instead of optimal resequencing model.
Several filters are applied and only groups with at least ten independent sequences that reach a certain level of homogeneity between the sequences and display bona fide TIRs are kept.
Here we restricted ourselves to shared indels larger than three nucleotides to ensure a certain level of complexity in the sequences, so that they would not be confused with coincidental random mutations.
We investigated the effect of removing those probe sets characterized by a certain level of probe promiscuity among transcribed sequences (cross hybridization filter).
There may be a certain level of assembly error in the sequences we report from this study that could be corrected in the future by repeating reads in the different haplotypes, or by generating scaffolds with a paired-end sequencing system [ 26].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com