The phrase "a batch of sequence" is not correct in standard English usage.
It may be intended to refer to a collection or group of sequences, but the phrasing is awkward and unclear.
Example: "The researchers analyzed a batch of sequences to identify genetic variations."
Alternatives: "a set of sequences" or "a group of sequences".
Using the SSR server, users can upload a batch of sequences in FASTA format and select the motif type and repeat length to search.
The basic work-flow of a fully automated MLTreeMap run proceeds as follows: First, a batch of input sequences (i.e., un-annotated nucleotide sequences) are searched for the presence of marker genes, by running BLASTX against a curated collection of reference proteins (including 'off-target' proteins where necessary).
We applied the panel to a batch of 48 samples exome sequenced by an external service provider, for which orthogonal genotypes were obtained concurrently through an independent genotyping provider using KASP genotyping (LGC Genomics, Hoddeston, UK).
Query 3 allows Blast searches (blastn, tblastx, tblastn) for a user-specified sequence (or batch of sequences) in the EUCAWOOD database.
A first batch of 2211 sequences, obtained by Genome-express (Grenoble, France), has been deposited in the GenBank database [GenBank: GW824594- GW826804].
For data submission, we have provided a template file in EXCEL format, which enables users to upload batches of sequences and information via email.
A second batch of 18549 ESTs, sequenced by the Genoscope (Evry, France), has been deposited in the European Molecular Biology Laboratory EMBLL) [EMBL: FQ014236- FQ032656,] and GenBank [GenBank: HO118288- HO118415].
Ergatis was designed to support batch processing of sequences in a high-throughput environment using compute grids.
The program is the more efficient, the larger the batch of query sequences is.
For every such processor and batch of allocated sequences, RNAhybrid is run separately; output is manipulated and parsed for coordinates, separately and concurrently.
