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Alignments yielding an E-value≤0.5 were selected and divided into four classes: Class A: alignments showing complete conservation of the active-site region, Class B: alignments showing partial conservation of the active-site region, Class C: alignments with proteases lacking an active-site annotation, and Class D: all other alignments.
The application of GC tests to the 'A' alignments (i.e., tandem gene duplicates from T. brucei plus any other gene family members) showed that ectopic gene conversion was very rare among these tandem gene arrays.
Open image in new window Fig. 2 a Alignments of μ-beam and μ-gas sensor.
(PPT 200 KB) 12284_2011_26_MOESM2_ESM.ppt Additional file 2 Figure S2. (A) Alignments of the shared putative 21nt-siRNA residing in the sequence of OsSLR1and in those of the four other members of the GRAS family.
(A ) Alignments of human Slo1 and Slo3 from various species are shown for the membrane-associated, pore-forming part of the channels, indicating the relatively high extent of conservation through this part of the Slo3 protein.
(a) Alignments to the rainbow trout (RBT) genome, BLAST results, gene functions, and gene ontologies (GO Slim Terms) for all mapped loci within the seven genomic regions that exhibited overlap among the three tests of adaptive divergence (Region of Overlap, described in Table 1).
Similar(53)
The ORF A alignment was comprised of 298 bp.
EvoDB is a catalogue of the evolutionary rate profiles and provides the corresponding phylogenetic trees, PFAM-A alignments and annotated accession identifier data.
Additionally, the corresponding phylogenetic trees, PFAM-A alignments and accession identifier data on all sequences including those that could not be retrieved are provided in the database.
The same parameters optimized from ref7 were used to test these 51 alignments in PfamA-mem (see Supplementary Table S3 for a list of these 51 Pfam-A alignments).
"This tends to happen when there has been an alignment, a decision to go towards this experience with consciousness and intention.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com