The phrase "a alignment of a" is not correct in written English.
It should be "an alignment of a" due to the vowel sound that begins the word "alignment."
Example: "The team is working on an alignment of a new strategy to improve productivity."
Alternatives: "a coordination of a" or "a arrangement of a".
As a concrete example, let us consider an alignment of a partial HMM model of eight nodes aligned with a sequence b=[ b1, b2, …, b7] of seven amino acids.
The first step was the construction of an alignment of a comprehensive set of K+-selective channel sequences forming the putative permeation path.
But, on balance, the course focuses on the promise and prospects that can occur when there is an alignment of a leader's passion, an organization's capability, and followers' shared commitment.
If an alignment of a single-mismatched read is made, a value of 1 is added to each element of the wild-type array in which a sequence match was detected.
Another paper in this direction by Coventry et al. presents a similar tool, MSARI [8] for identifying conserved stems in an alignment of a number of (10 15) potential ncRNA sequences.
However, to orient other intermediate species, particularly AFP-producing ones, to the phylogeny, Bayesian analysis was performed on an alignment of a portion of the 16S rDNA region, corresponding to bases 3081 to 3532 of zebrafish 16S rDNA (AC024175).
Proteins identified as sHSPs are also linked to the Pfam [32] motif PF00011, which is built from an alignment of a region of 115 amino acids roughly corresponding to ACD and the C-terminal region.
However, manual inspection of an alignment of a number of subfamily III and IV sequences indicated the presence of additional conserved, potentially zinc binding residues.
HMMs in the Pfam database are constructed from an alignment of a representative set of sequences for each protein domain, called a seed alignment.
Profiles are tables that give a score for a particular amino acid to be found at a particular position in an alignment of a protein family.
