Convergence of chains was assessed by visually inspecting the likelihood values of the trees and the tree height parameter.
However, by visually inspecting the animations (e.g., Animations S1 S4), we find most of them likely have shallow origins instead of from the lower crust or upper mantle.
The optimal wavelet packet node can be selected by visually inspecting the largest sparsity value of the wavelet packet coefficients obtained from all wavelet packet nodes.
Cardiologists can then spot abnormal heart rhythms by visually inspecting the resulting waveform for major features linked to the function of the top and bottom chambers of the heart, as well as the heart's ability to "reset" itself between beats.
The unachievable aim of checking every ship by opening every container and visually inspecting the contents led the government to look to computer systems that would try to predict which cargo containers were likely to hold contraband.
Custom databases for nirS, nirK, nosZ, norB, and nrfA were created by searching for proteins with related annotation in the NCBI's Genbank and visually inspecting the alignments for the conservation of functional domains and motifs.
Fine alignment of 384-well plates in the CCDU was performed by visually inspecting the colour change of small disks (1 mm size) of litmus paper placed at the bottom of the wells, caused by the deposition of sorted droplets.
The cabin inspection service at Kennedy includes screening food-service workers and cleaning crews with metal-detector wands, keeping logs of who may board during a plane's downtime, as well as visually inspecting the entire aircraft.
We checked the convergence of chains by visually inspecting the convergence of likelihoods, by calculating the effective sample size and the Geweke's diagnostic87 of log-likelihoods, numbers of shifts and evolutionary rate parameters, using functions in CODA 0.19-1 (ref. 88).
The convergence of the analyses was checked by visually inspecting the log-likelihood values and by computing the effective sample size and the Geweke diagnostic for the log-likelihoods, the number of speciation rate shifts, the number of extinction rate shifts and the number of mass extinction events using the effectiveSize and the geweke.diag function of the CODA 0.19.-1 package88, respectively.
Publication bias was assessed by visually inspecting the funnel plot.
