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Sequence assembly and annotation were performed as described in Farmerie et al. [17] using Newbler v1.1.03.24 and Paracel TranscriptAssembler. Minimum confidence for a match was set at e<1×10−4.
Sequence assembly and annotation and expression analyses were carried out by RWN.
Sequence assembly and annotation were carried out by Zhongxin Biotechology Shanghai Co., Ltd (Shanghai, China).
Sequence assembly and annotation of the A ethionema arabicum genome was obtained from Haudry et al. (2013).
As a summary of the ARTS paper, the training and validation were extracted from the dbTSS version 4 (dbTSSv4) [21] which is based on the UCSC human genome sequence assembly and annotation version 16 ("hg16") [22].
DNA sequencing, sequence assembly and annotation were done as described previously by Rise et al. [ 20].
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A mirror of the UCSC genome browser and database was created with the Bos Taurus v. 3 genome sequence assembly and annotations (bosTau3, August 2006) [48], [49].
Our sequencing, assembly, and annotation efforts yielded an annotated transcriptome library for T. bernacchii containing 30,107 unigenes of which 13,003 possess strong homology to known proteins.
Overview of sequencing, assembly and annotation.
provided DNA samples, and R.M. performed DNA sequencing, assembly, and annotation.
M.X., Y.Y., J.M. and Q.G. performed genome sequencing, assembly and annotation.
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