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OsBgal7 (Rice genome project locus Os02g0219200) and OsBgal2 (Os06g0573600) are located on a chromosomal segment duplicated between chromosomes 2 and 6, while OsBgal10 (Os08g0549200) and OsBgal11 (Os09g0539200) are located on segments duplicated between chromosomes 8 and 9.
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It is also possible to map rice genome annotation project (RGAP) locus ids in the MapMan tool.
A non-restorer line, Nipponbare, contained a putative allele of PPR782a, which is encoded by the Rice Annotation Project (RAP) locus ID Os10g0495200.
To perform a phylogenomic analysis of PRXs in rice and Arabidopsis, we collected 11 family members from the Rice Genome Annotation Project using locus IDs (http://rice.plantbiology.msu.edu/), and 10 Arabidopsis family members previously reported (Umate 2010).
The target genes' Rice Annotation Project (RAP) locus identifiers were used to search for their KEGG pathways [ 81].
A previously reported [ 40] American pika (Ochotona princeps; Ocpr) TRIM5α nucleotide sequence retrieved from the whole genome shotgun (WGS) project (contig132533, Locus AAYZ01132534) was also included.
To more completely assess the TRIM5α gene in the Lagomorpha order, we also included American pika (Ochotona princeps) TRIM5α nucleotide sequence retrieved from the whole genome shotgun (WGS) project (contig132533, Locus AAYZ01132534).
Rosen-Queralt titled the project "Cultivus Loci: Suckahanna" a Latin term meaning "cultivated place" followed by the Powhatan Indian word for water.
A genome-wide association scan (GWAS) for mean telomere length within the COGS project: identified loci show little association with hormone-related cancer risk.
AC conceived and supervised the project, selected loci and designed primers, and wrote the article.
In dairy cattle, for example, 28.3 million variants in the whole genome were identified from 234 bulls sequenced with an average coverage of 8.3X in the first phase of the 1000 bull genomes project, and loci associated with milk production and curly coat were detected by genome-wide association studies [ 9].
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