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Opposite expression shifts were observed for genes that kept, gained or lost H3K27me3 in the tumor samples.
Opposite expression was observed in the stem library for the two family members (13,327 versus 9 reads).
NKG2D ligands showed clearly the opposite expression pattern and were expressed only in ES cells (Fig. 6D).
wnt11 shows an opposite expression pattern, being more highly expressed in symbiotic than aposymbiotic insects (p-value = 1.10−9).
The differentially expressed genes that exhibited opposite expression patterns between IR28 and LYP9 at 24 hpi and 48 hpi.
The set 3 and set 4 genes also showed opposite expression patterns in general.
In general, set 1 and set 2 genes had opposite expression patterns.
Understanding transcriptional regulation of alternatively spliced transcripts carrying opposite expression patterns may elucidate mechanisms of the rice defense response.
Of the alternatively spliced transcripts displayed in Fig. 5, there is a transcription factor (Os08g43334) that displays opposite expression patterns in M. grisea treatments.
Among them, only 7 TFs exhibited the same expression pattern, and 8 exhibited opposite expression patterns in OsHsp18.0-CI OE and 9804-Rxo1.
The isoforms for the other two proteins (OsPrx111 and β-1,3-glucanase), representing 9 identities, exhibited opposite expression patterns (Figure 4B).
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