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On a per-sample basis, the first principle component separated the stroma and adult mammary stem cell (aMaSC) samples from the LumProg and MatureLum samples (Fig. 2c).
On a per-sample basis, identical reads were identified (i.e., dereplication) and unique reads were used for operational taxonomic unit (OTU) generation.
The simplest variant detection methods identify variants on a per-sample basis, one position at a time.
Both, eClass and FLEXFIS-Class methods are designed to work on a per-sample basis and are thus one-pass, incremental.
The lowest allelic fraction at which somatic mutations could be detected on a per-sample basis was estimated based on cross-contamination level of 2%.
This paper reviews a methodology for evolving fuzzy classification which allows data to be processed in online mode by recursively modifying a fuzzy rule base on a per-sample basis from data streams.
Simultaneous estimation and optimization of the inbreeding coefficient on a per-sample basis allows both outbred and inbred samples to be analyzed simultaneously and improves both accuracy and call rates.
In parallel, we have developed novel computational methods for SNP selection, allele calling, and quality control that permit the incorporation of inbreeding information on a per-sample basis, allowing for accurate genotyping of both inbred and heterozygous samples (Wright et al. 2010).
Both expression and methylation data were then transformed to rank space on a per-sample basis.
Denoising is performed on a per-sample basis and low abundance sequences may still contain errors.
Computation time for single and multi sample methods was similar when calculated on a per-sample basis.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com