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Orthology inference was then carried out on the newly inferred trees with paralogy pruning by maximum inclusion using the prune_paralogy_MI.py script (relative tip cut-off 0.2, absolute tip cut-off 0.5, minimum taxa 27), which iteratively extracts the subtree containing the most taxa without taxon duplication.
Because our analysis included many taxa previously not analyzed by any molecular characters, newly inferred and highly supported relationships among taxa allowed robust inferences of ancestral states.
In order to assess the accuracy of our network analysis method and the validity of our T-cell activation network, we validated the newly inferred links as well some of the predicted ones in a new dataset of 16 healthy individuals.
The newly inferred edge cJUN →ErbB-1 in HCC1954 also indicated raised activity of ErbB-1.
These results were in line with the newly inferred edges in the network reconstructions.
Consequently, we will be able to estimate the E wijprior) and σijprior for newly inferred models from available network models.
Similar(38)
To verify the newly found (inferred) genes, we first used the PGDB database.
The existence of newly observed particles is inferred if the products they decay into are detected.
These values were plotted against time, and half-time of bleaching for the newly cloned proteins was inferred relative to EGFP.
The functional annotation of most genes in newly sequenced genomes is inferred from similarity to previously characterized sequences, an annotation strategy that often leads to erroneous assignments.
The functions of the newly identified genes were inferred by their similarity to other known genes identified in the BLAST searches.
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