Sentence examples for Minimal alignment from inspiring English sources

Furthermore, minimal alignment length (hsp filter) was set to 33 to avoid hits with matching region smaller than 100 nucleotides.

First, a blastx search [221] in the NCBI nr.aa database was performed, and all sequences producing an E-value<1E-3 and a minimal alignment length of 33 residues were considered a hit.

The sequencing reads for each run were mapped separately using Blast (Blastall v2.2.20) with the following parameters [-p blastn -e 0.0001 -b 20 -v 20 -m 0 –W 11 -F F], allowing up to 6 alignment errors, and minimal alignment lengths of 27 and 30 bp for the 33 and 38 bp long sequencing reads, respectively.

Program parameters were varied in repeated runs: CYNTENATOR gap and mismatch penalty parameters were set to 0.1, 0.5, 1, 2, 3, 5, 20, the alignment score threshold was set to 1, the minimal alignment length to 2, the maximal number of retained alignments to 1,000 and the gene coverage filter to 4. MCMuSeC was run to report gene clusters, which are shared by at least two genomes.

Alignment candidate threshold (minimal alignment length to map the read) was optimized with hash size 20.

For read mapping, the minimal read coverage was set at 90% and the minimal alignment identity at 90%.

Although economic decisions go directly to the intrinsically political question of resource allocation, an economic region can be deployed as a technocratic tool by the participating government to advance a clearly defined and limited economic agenda without requiring more than minimal political alignment or erosion of formal state sovereignty.

On the other hand, plots for the cycling gene dataset showed minimal variation in alignment.

A similar analysis reported that when the true reference transcriptome is available BWT methods are faster with minimal differences in alignment specificity.

Although the effects of the different penalty schemes were minimal, the best alignments were produced using the Needleman-Wunsch algorithm with a gap penalty of 2 for all regions except the V6, which had an optimal gap penalty of 1.

Minimal loss of hindfoot alignment occurred when comparing radiographs taken immediately after operation and at final follow-up.