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Graph-based pathfinding methods can incorporate reaction stoichiometry to limit the number of biologically irrelevant pathway results.
In particular, we incorporate reaction stoichiometry and force paths to satisfy the mass balance equation and perform in sustained steady-state.
All genome-scale metabolic models published to date are stoichiometric models, which incorporate reaction stoichiometry but do not require any knowledge of kinetic parameters.
Also, as far as I can tell, the authors did not incorporate reaction time, which is typically used as a trial-by-trial indicator of decision dynamics, into these analyses.
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On the basis of measurements, we formulated a comprehensive model for kinesin motion that incorporates reaction pathways for both forward and backward stepping.
With only three experimentally determined parameters, the new model incorporates reaction kinetics, mass transfer, and photon transfer.
The proposed model incorporates reaction rate of urea hydrolysis and takes into account the effects of solution non-ideality and back-mixing on the performance of hydrolysis reactors.
A detailed reactor model incorporating reaction kinetics, mass transfer rates and phase equilibrium is presented to systematically investigate the effects of mass transfer and catalyst activation on induction period in 1-octene hydroformylation in CXL.
The model suggested in this paper is comprehensive, since it simultaneously incorporates reaction-diffusion terms and mixed time delays.
It incorporates reactions that have their own 'organic' chemistry (e.g. hydrosilylation) and covers solid materials that can be either metallic (e.g. silicon metal), semiconductors (e.g. silicon carbide wafers), ceramic (e.g. porous silicon) or inert particulate fillers (e.g. precipitated silica).
And Trump has incorporated reactions to them into his usual campaign speech.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com