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Furthermore, the records of cows are included in the sire phenotype.
Genotyping errors are implicitly corrected for in the sire by selecting the most probable allele.
In both cases the Y chromosome in the sire was YEVEN.
The grouping of offspring at consecutive markers provides information about the most likely phase in the sire.
Indivuals in the Dam group were from the commercial breed and individuals in the Sire group were from the Meishan breed.
The top 60% of male candidates in the sire line were used in the commercial production system for the terminal line.
Similar(33)
All QTL were detected in the sire-based analysis.
For chromosomes with the denser set of markers genotyped (that is, were significant in the sire-based HS analysis), the SP analysis was repeated using the denser set of SNPs.
Mate selection automatically invokes divergent selection in two parental lines for an over-dominant QTL and increased frequency of the favorable allele toward fixation in the sire-line for a fully-dominant QTL.
In the sire-dam mixed DHGLM that we applied, the squared residuals that were used as phenotypic observations of uniformity included both the Mendelian sampling term and the true residual that remained unexplained by the systematic fixed effects, the random additive genetic effects, and the non-genetic random effects.
Almost all SNPs showed heterozygosity in the sires except 14 SNPs that were included because of interest to other projects.
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