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In alignment of nucleotide sequences with secondary structure the aligners that are aware of the secondary structure generally outperform those that rely on sequence data alone [41], such as ClustalW [42] and MUSCLE [43].
To overcome a bias in alignment of short reads, where the reference allele reads are preferentially aligned over reads with the variant allele, we used a genomic reference containing IUPAC codes for SNPs in dbSNP.
Direct evidence for a shear-induced phase transition with a change in alignment of the particles is seen.
This not only reduces the efforts in alignment of subsequent mask, but also reduces the associated errors.
Acoustic waves were emitted normally into the PSi layers with uncertainty in alignment of less than 0.5°.
The combined effect of solvent evaporation, ultrasonic agitation, and confinement within the channels of the PDMS stamp resulted in alignment of peptide-amphiphile nanofibers parallel to stamp channels.
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This 5' flank pattern is present in about 35% of the aligned sequences, and is not present in alignments of motifs outside of the HADB enrichment zone.
Genomes were aligned using mauveAligner (Mauve version 2.1.1) [39], [39] with default parameters, which resulted in alignments of 116 genome segments.
Beijing retained its characteristic willingness to adjust to changes in alignments of power and in the composition of foreign governments without passing a moral judgment".
The MSAs resulted in alignments of widely different lengths and quality (Table 2).
Finally, Shannon's entropy for each position in alignments of SVR and NR sequences was assessed.
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CEO of Professional Science Editing for Scientists @ prosciediting.com