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Using the TcTAC15 locus it was possible to separate the strains belonging to the T. cruzi I lineage (DTU I) from those belonging to T. cruzi II (DTU IIb), T. cruzi III (DTU IIc) and a hybrid group (DTU IId, IIe).
The I lineage showed the highest value.
Similarly, patient T8 is assigned a mixed variation pattern, where the control-region fragment unambiguously indicates a haplogroup I lineage and the coding-region fragments point to haplogroup U (A11467G) instead of haplogroup I (with expected mutation G8251A).
All species in the asterid I lineage were missing the intron nad7i676.
The Mα, Mβ, Mγ subfamilies comprise the Type I lineage, whereas the MIKC and Mδ constitute the Type II lineage.
In the current study, 15 strains were clustered into the SEA I lineage together with the stains from China, Laos, Thailand, and Sri Lanka.
Similar(28)
Similarly, MLVA put lineage II strain EC869 on its own branch, whereas the lineage I/II and lineage I strains did not group separately with this method.
The number of different ways these n m lineages coalesce to i lineages is R (n m ) R (i ).
At any time point t there are n k species with l i lineages in species i.
Further, for each of these coalescence patterns, we need to count the number of different ways these i lineages and other n1,…, n m −1 lineages can coalesce.
We can consider that we also cut these i lineages at time m−1 and label them with the ranked subtrees descendant from these lineages.
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