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The atom-positional root-mean-square deviations (RMSD), after a roto-translational least-squares fit, of (i) backbone atoms (C, Cα and N) of the CH3 framework regions (i.e. excluding N- and C-terminal loops) and (ii) backbone atoms (C, Cα and N) of the EF loop were calculated as a function of time with respect to the initial structure.
A tetrasaccharide corresponding to a sequence of the rhamnogalacturonan I backbone has been synthesized.
The 31P chemical shifts can be interpreted in terms of the BI↔BII backbone conformations and dynamics.
The DNA propensity to undergo BI↔BII backbone transitions is highly sequence-dependent and can be quantified at the dinucleotide level.
The grooves width and depth of free and protein-bound DNA are found to be clearly related to the BI/BII backbone conformational states.
Another feature distinguishing Arf/Arl from Gα/Sar GTPases is an isoleucine or leucine residue (Ile74Arf1 in Figure 5A) the side-chain of which, in the GTP-bound state, packs against the switch I backbone residue that is located between a conserved glycine residue and a conserved threonine residue.
Similar(51)
In general, virtual infrastructure-based protocols can be divided into (i) backbone-based approaches (e.g., [11]), and (ii) rendezvous-based approaches (e.g., [12]) depending on how the virtual infrastructure is formed by the set of potential storing nodes.
In addition, the rhamnogalacturonan-I backbone is also substituted with various oligosaccharides, such as arabinooligosaccharides and galactan oligosaccharides (Gruppen et al. 1993).
These results suggest a possible function for the pectinase gene cluster in the metabolism of the RG-I backbone.
Fewer pectic epitopes (RG-Ic, RG-I backbone and HG backbone-1 groups) are released from PvMYB4-OX wall residues during chlorite extraction.
Another significant difference was noted in oxalate and carbonate extracts of biomass, where extracts of walls incubated with wild-type C. bescii and the parent strain showed an almost total absence of rhamnogalacturonan I (RG-I) backbone epitopes.
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