> As we are looking at methylated reads, the occurrence of a C in both strings denotes that a methylated cytosine has been aligned, and therefore the alignment of that string should be 'rewarded'rewarded
One reason progressive methods are so strongly dependent on a high-quality initial alignment is the fact that these alignments are always incorporated into the final result — that is, once a sequence has been aligned into the MSA, its alignment is not considered further.
The resist got exposed in the mask-aligner for 10 s after the photomask has been aligned, and then resist was developed for 30~60 s.
This step was important because one category of spurious alignment is the case where a pseudogene has been aligned in one or more lineages.
Stanford has been aligned with Silicon Valley and its culture of disruption.
This support translated into backing from Turkey's powerful Motherland Party, which has been aligned with big business.
Specifically, the standard has been aligned with the United Nations Globally Harmonized Systemm of Classification and Labelling of Chemicals (GHS).
Equally, her work has been aligned with that of male artists such as Robert Gober, as well as Matthew Barney's story-like installations.
Jaish-e-Muhammad has been aligned with a radical pro-Taliban political party that denounced the United States military strikes in Afghanistan.
The government employees' union, which has been aligned with Fatah, the party ousted in the Palestinian elections in January, supported the strike.
Originally, it has been aligned by θ≈1.0° with respect to the hBN flake, as confirmed by AFM (Fig. 1b) and Raman (Fig. 2a,b).
