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From this alignment, a maximum likelihood analysis using the WAG model [24] was conducted using RAxML [25] with a bootstrap analysis [26] based on 100 replicates.
From this alignment, we derived a total number of 13,324 SNP loci.
From this alignment, phylogenetic trees were constructed by neighbor-joining and maximum likelihood methods.
From this alignment we generated a phylogeny of the Raptor homologues (Fig. 1C).
From this alignment, an ML phylogenetic tree was constructed using PhyML (Guindon and Gascuel 2003).
From this alignment we calculated a Bayesian phylogeny by combining 8 independent runs of MrBayes3.1.2 [ 14].
From this alignment primers were designed in conserved regions using Primer3Plus [ 89].
From this alignment, a primer pair was designed to bind exclusively to the Δ11 desaturase genes (Table 1).
From this alignment it also appears that hPEPT1 has a Phe residue at the position corresponding to Phe311 in YePEPT.
From this alignment, we extracted 85,488 SNPs, which were used for the construction of a phylogenetic tree.
From this alignment, we found 25 positions that display changes in less than 0,3% of the sequences.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com