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The statistical results for gained length and wet weight were qualitatively similar and tightly correlated (Pearson's r = 0.88); for brevity, we only present results for gained length.
The average connectivity of proteins when lost from the network was 5.21 ± 6.48, higher than that for gained proteins, although the median connectivity is two.
The depth of coverage was used to call for gained or lost regions in these genomes (Table S2 in Additional file 1) [ 29].
The connectivity distribution for gained proteins follows a power-law (r2 = 0.95) and its exponent is somewhat steeper than that for the overall network.
As for gained genes in domestic goat, CFH (Complement factor H) is involved in the regulation of complement activation and thus the innate response against microbial infections [ 57].
To determine the relationship between gene copy number alteration and expression, correlation analysis was performed for gained genes by comparing copy number amplified/gained cases vs. copy number neutral/lost cases.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com