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For each proportion of characters with heterogeneous composition (i.e. 0%, 10%,..., 50% of the length of the alignment), 500 four-sequence alignments were generated following this procedure.
For each proportion of the original sample size, the procedure is repeated 20 times to average out variability due to random subsampling.
For each proportion of SNPs, BSS and LDA were applied, and the classification error rate was estimated in a 10-fold cross-validation scheme.
For each proportion of SNPs to be used for predictions, the number of times each SNP was included in the model in the 1000 test replicates (10-fold CV × 100 repetitions) was counted: dark orange/red and light orange/yellow points in the plot correspond to SNPs most and least frequently used in the predictive models.
To properly interpret of the comparisons of proportions between different crash types, we calculated 95% confidence intervals for each proportion.
Check whether estimated 95% credibility intervals for each proportion contain the original generated proportions.
Similar(36)
For each dimension, the proportion of missing values was low (ranged from 0.6 to 2.9%).
According to the mix proportions in Table 1, for each mix proportion, ten groups of specimens were prepared.
In our previous study, the virus activity was measured by the weekly proportions of specimens positive for each virus (proportion variable), respectively.
To achieve a statistical validity of the results, ten extractions and, hence, ten stability analyses were performed for each block proportion considered.
Binomial confidence intervals (CIs) were calculated for each prevalence proportion.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com