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Consed: a graphical tool for sequence finishing.
The analysis of deduced protein was carried out using ExPASy tool (http://www.expasy.org), which has hyperlinks to different prediction programs, including SingnalP for single peptide prediction.
The covariance analysis was performed on viral sequences translated into amino acid using ExPASy tools [ 28].
The amino acid sequence and protein analysis of NnPAL1 are performed with the ExPASy tools (http://us.expasy.org/tools) and NCBI server (http://www.ncbi.nlm.nih.gov/).nih.gov/
N-glycosylation sites were predicted via ExPASy tools [ 71].
Visualization of the Meme motifs in the MdHsfs was performed by using Expasy tools (http://prosite.expasy.org/mydomains).org/mydomains
We used GENECONV [ 83], a powerful tool for the detection of sequence recombination [ 84], to test for traces of gene conversion events within and between loci.
Functional sequences were predicted for multiple perA gene copies through translation of each gene sequence using ExPASy online DNA sequence translation tool [ 32].
Amino acid sequences were deducted by ExPASy Proteomics and Sequence Analysis tool [ 34, 35].
The potential chymotrypsin cleavage site in Licβ was observed using the Expasy PeptideCutter Tool (http://www.expasy.ch/tools/peptidecutter/). Transmembrane sequences were identified using the TMHMM web server v. 2.0.
The DNA sequences were translated into peptidic sequences with ExPASy Transalte tool.
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