Sentence examples for Core alignment from inspiring English sources

This yields an accurate core alignment by first aligning each database sequence to its most closely-related profile and then aligning each profile alignment to the structural core based on the (manually-curated) template alignment.

A whole genome sequence alignment of the 12 C. trachomatis genomes was created using progressive Mauve [ 59, 60] and the core alignment was extracted by keeping only the regions where all genomes aligned over at least 500 bp.

The damage zone of the GF is asymmetrical around the axes determined by the core alignment and almost exclusively concentrated south of these axes.

We tally the results in this manner so as to perform a more reasonable comparison between the core alignment aspects in the context of the whole human genome of other methods.

Mugsy also identified a slightly longer core alignment.

The resulting core alignment was used to infer a Maximum Likelihood tree with RAxML [ 59].

About 1952 the first relatively cheap RAM was developed: magnetic core memory, an arrangement of tiny ferrite cores on a wire grid through which current could be directed to change individual core alignments.

The two trimmed core alignments were used for further phylogenetic analyses.

Despite differences in the alignment, the phylogenetic trees based on the two core alignments produced identical topologies with similar Bayesian support values.

Maximum-likelihood phylogenies for all 2,140 individual core alignments were constructed at both the DNA and protein level, using the same parameters as above.

In total, 1,000 bootstrapped replicates were made from each of the four core alignments using SeqBoot from Phylip with default settings.