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For all peptides, isoelectric points were calculated using ExPASy [ 96].
Visualization of the Meme motifs in the MdHsfs was performed by using Expasy tools (http://prosite.expasy.org/mydomains).org/mydomains
The human cyclophilin A (PDB-ICWA) was used as template to generate model for cyclophilins from rice (LOC_Os09 g39780) using ExPasy swiss model web server (http://swissmodel.expasy.org).org
Protein translation was conducted using ExPaSy http://ca.expasy.org/tools/dna.html and protein alignment was done using Multiple Sequence Alignment program.
Further detailed analysis of the protein sequences was done using Expasy (http://prosite.expasy.org) and the data are presented in figure.
An analysis of the ORFs within the coding region of each TE was performed using ExPASy (http://expasy.org/) and ORF-finder (http://www.ncbi.nlm.nih.gov/projects/gorf/).nih.gov/projects/gorf/
Protein physiochemical property analysis was carried out using ExPASy webserver [ 72].
Biological functions study of various proteins was made using Expasy database and Pubmed literature.
The isoelectric point (pI) of each predicted proteins were calculated using Expasy proteomics server [ 60].
Theoretical molecular masses and pI values for mature peptides were estimated using exPASy.
Amino acid sequences were deduced using ExPaSy (http://web.expasy.org/translate/.org/translate/
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