Automated model building in ARP/wARP was utilized to generate the initial model.
Automated model building with ARP/wARP resulted in a model comprising more than 90% of the expected protein residues.
Automated model space generation is currently limited to two-reactant systems.
Automated model development can exclude unique metabolic pathways if they are absent from the training set of models.
Automated model building using ARP/wARP (Langer et al., 2008 ) fitted ∼95% of the OTULIN sequence into the electron density.
A general automated model parameter optimizer has been developed within AZOrange.
In particular, we focus on abstraction and level detail within models and automated model building.
The experimental electron density was of excellent quality (Figure 3B) and permitted automated model building with Arp/wArp for 90% of the model.
In order to automatically initialize the EM algorithm, the fully automated model initialization as given in Ref. was implemented.
The accuracy of participating modeling servers is continuously evaluated by the Continuous Automated Model EvaluatiOn (CAMEO) project.
