Sentence examples for As we annotated from inspiring English sources

As we annotated the literature, we concurrently added required terms and relationships to these and other ontologies.

They were presented to the second annotator as we annotated them grouped by nominalization (i.e. all tokens of inhibition together, all tokens of induction together, etc)., ordered by the order in which they were retrieved from the corpus.

They were presented to the second annotator as we annotated them grouped by word form (e.g. all tokens of increase together, all tokens of increases together, etc).; within a word group, ordered by UNIX sort of the source filename.

To identify the bottlenecks, we quantified the time involved in the major aspects of phenotype curation as we annotated characters from the vertebrate phylogenetic systematics literature.

In this study this number was increased to 15, as we annotated the peptide precursor transcripts of two novel neuroparsin precursors, the tachykinin precursor, ecdysis-triggering hormone precursor, long neuropeptide F precursor and allatostatin-C precursor in the EST database published by Kang et al [ 13].

One obvious shortcoming of our approach is its inability to detect wholly novel types of TEs as we annotate only these sequences commonly recognized as TEs, nor can our approach identify TEs that remain completely unassembled.

As such, we annotated and analyzed putative TFs in the sets of DEGs detected in this study based on a soybean TF database that is composed of 5,671 predicted TFs [ 37].

We annotated AS-NMD candidates as transcripts containing in-frame premature termination codons (PTCs) >50 nucleotides 5' of the last exon splice junction.

To study the function of fungal AS we analysed annotated and predicted Pfam domains for all genes and their relations to the AS rate of the gene families.

Using alignment score higher than 100 as the cutoff, we annotated 778 "unique bear EST clusters" with known gene symbols.

We annotated AS events as modified protein when both isoforms are protein-coding, loss-of-function if only the reference isoform is protein-coding, gain-of-function if only the alternative isoform is protein-coding, and non-coding if both isoforms are non-coding.