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The top 10 abundant taxa were shown.
The other top 10 abundant genera detected in all samples were Comamonadaceae (no rank), Thauera, uncultured Nitrosomonadaceae, Dechloromonas and Rhodocyclaceae (no rank) belonging to β-proteobacteria, Candidatus Microthrix belonging to Actinobacteria pyhlum, OPB35 soil group (no rank) belonging to Verrucomicrobia pyhlum, and Chloroflexi (no rank and uncultured) belonging to Chloroflexi phylum.
At least a third of the 10 abundant sequences were of fecal origin.
Members of Bacteriodetes, Firmicutes and Actinobacteria represented 78% of the 10 abundant sequences of aerosols from Sonoma (Table 2) and almost half them were Clostridia (Figure 6).
Chloroflexi, Actinobacteria and Proteobacteria sequences were represented equally in the top 10 abundant sequences from dry manure, compared to Firmicutes and Bacteriodetes in fresh manure; Proteobacteria was the only phylum detected in aerosols (Table 2).
The LC gradient (A = 100 mM HOAc in H2O, B = 70% acetonitrile/100 mM HOAc in H2O) was 0-70% B for ∼180 min. Full-scan mass spectra were acquired over an m/z range of 300 to 1575 and either MS/MS for the top 10 abundant species or multi-stage activation (MSA) for the top 6 abundant species for a given MS scan was used for peptide fragmentation.
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A total of 14 abundant classes (relative abundance > 1%) were identified (Table 4).
The top 20 abundant taxa are shown.
Summary of 34 of the 38 abundant viral clusters.
During episode 3 abundant sediment was produced by glacial erosion.
Affinity ligands were tested for the removal of 14 abundant human plasma proteins.
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