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12284_2014_2_MOESM1_ESM.xlsx Additional file 1: Primer sequences of markers developed for the genetic analysis.
The LSSP-PCR profiles obtained with the Internal 1 primer or with the G1 primer allowed the grouping of the leptospires into serogroups.
The primers utilized are shown in Fig. 1 Primer pairs were designed using the Primer Quest tool found on the Integrated DNA Technologies-ITD website, (http://www.idtdna.com/site).
Table 1 Primer sequences and probes designed in the study Primer Sequence (5′ → 3′) Genomic position Product length (bp) F1 R1 CGGAATTCAGTCCGCGAAGAAGTTTTTG CCCTCGAGGCGAGTCCGAGAAGAATACG 125 622 514 F2 R2 GGGCTCTACTCCACCAACAA CGAGTCCGAGAAGAATACGC 442 621 180.
Primer AP1 (Table 1: Primer AP1) was used as the antisense primer for all three approaches.
These were SAG 1 (primer sequences 5'-CGACAGCCGCGGTCATTCTC-3' and 5'-CGACAGCCGCGGTCATTCTC-3') (28), SAG 4, (primer sequences 5'-TGGACCTACGATTTCAAGAAGGC-3' and 5'-GCTGCGAGCTCGACGGGCTCATC-3') (29) and BAG 1 (primer sequences 5'-TCCGCCGGGAGCTTGTCCACC-3' and 5'-GCAAGTCAGCCAAAATAATCA-3') (30).
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By using the CTX group 1 primer-pair, none of the inserts were found by blastx search to contain the gene encoding the CTX-type β-lactamase.
PCR was done with a Tm of 56 °C for the BH4-M22 primer set and 57 °C for the Rc-1 primer set.
PCR amplicons were sequenced by using the P1 1 primer.
hsf-1 primer set 1: forward: TTGACGACGACAAGCTTCCAGT; reverse: AAAGCTTGCACCAGAATCATCCC. hsf-1 primer set 2: forward: GTCTCTGTCATGCAGCCAGG; reverse: TTGGGTCCGGCAGTTCC.
The Mtg-1 primer annealed only to the longer ~1.1 kb transcript.
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