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Each simulation begins with a burn-in phase of T 1 generations in which the population undergoes random mating, mutation, and recombination by crossover.
Hence, considering the period through generation g, in addition to g itself, this model has 2 g − 1 independent parameters: one introgression proportion in the first generation and two introgression proportions in each of the next g − 1 generations.
During stage 1 (generations 0 to 8), the lists of parents were selected based on their EBV for trait A only, without considering the evolution of the genetic mean for trait B or the average coefficient of inbreeding.
Bayesian inference based upon posterior probability distribution of trees was performed with MrBayes [ 47] with the following settings: seed and swapseed = 1, generations = 1,000,000, runs = 2, chains = 4, sampling every 100th generation, starting trees = random, other settings = default.
By perfect mixing, the probability they share a concestor in the previous generation is 1/ N. The probability the concestor is g + 1 generations back is 1 N (1 − 1 N ) g.
Reference set: 1) Generations 8 and 9 of line 1, were used to observe the effect of using closely related animals in the test and reference populations; 2) Generations 1 and 2 of line 1, were used to test divergent relationships; and 3) Generations 8 and 9 of line 2, were used to represent a different strain or closely related breed.
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1) Generation cost.
1) Generation of the initial phenotype descriptor.
R1: backcrossed to C57BL/6 for 1 generation.
Trees were generated for 1,000,000 generations, sampling every 100 generations.
FAIRFIELD Fairfield Arts Center "3 Generations," group show.
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