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As shown on Fig. 1A and Additional file 1, efp, yjeA and yjeK genes are physically clustered in phylogenetically distant organisms.
Similar(59)
The other 7 are implicated in S motility (sgmH, MXAN_2526 ; efp, MXAN_5769 ; epsL, MXAN_7437), A motility (agmO, MXAN_2538), gene expression (ihfA, MXAN_3596 ; rpoD, MXAN_5204), or spore formation (sapA, MXAN_7407).
Interestingly, in both cotyledons and cauline leaves, the presence of PP TCs with abundant wall ingrowths correlates with the high relative expression of both AtSWEET11 and AtSWEET12 (eFP Browser; bar.toronto.ca).
Column subheadings for such a table should include: 1) Species name; 2) Genome accession number; 3) efp ID (locus, GI or accession number. Locus tags would be the best because they will show proximity of neighboring genes); 4) YjeA (the same information or blank if absent); 5) yjeK (the same information or blank if absent).
In order to obtain an estimate of the over-representation of localized enzymes in the first and last positions of the 529 EFPs, we computed for a given EFP length, the ratio of the number of EFPs having the first or the last enzyme localized to the total number of same-length EFPs having at least one enzyme localized.
Basis for the calculations was the so-called 'Standard HTTR Operation Plan' with a nominal operation time of 660 efpd including a 110 efpd period with enhanced fuel temperatures.
The irradiation started on 9 September 2004 and was terminated on 18 October 2005 after 10 reactor cycles totaling 249 efpd and a maximum burn-up of 11.07% FIMA.
But, it is planned to be replaced after every 3 cycles (1 cycle equals 180 efpd) of operation due to radiation damage effects in hexcan D9 steel.
The resulting 7 EFPs are also presented in Table 1.
List of 435 EFPs with at least one enzyme localized.
When we computed the EFPs of this network by EFPTools [ 43], only 90 EFPs are determined.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com